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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4900382_4901024_R

Intron Information:

Intron Rank:
148874
Intron Class:
major
Intron Phase:
Intron Coordinates:
4900382 - 4901024
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCTT
U12 Branch Point Sequence:
TCTCCCTCTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
34.6
-0.9
4.2
73.6
41.8
Major PPT
89.4
0.89
0.6
87.7
22.4
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
37.3
-0.9
3.6
65.57
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027561
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018092
4900304 - 4901766
1463