About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4901248_4907347_R

Intron Information:

Intron Rank:
148884
Intron Class:
major
Intron Phase:
Intron Coordinates:
4901248 - 4907347
Intron Length:
6100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.2
0.75
0.6
78.6
23.1
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027561
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037745
4893029 - 4907836
14808