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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49013853_49014860_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49013853 - 49014860
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACAGTTTTAACA
Flanking Amino Acid:
TKLVLLHETPADMYIGHHGE
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.2
0.81
0.8
78
40.1
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
59.2
0.28
1.4
61.43
39.2

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997