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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49014945_49016666_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49014945 - 49016666
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTATCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATCT
Flanking Amino Acid:
RRFILTILNMVFNLFQHKSL
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
68.2
42.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
86
26.8
Minor 5ss
33.9
-1.8
3.3
45.8
44.4
Minor BPS
68.7
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997