Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4909040_4909225_F

Intron Information:

Intron Rank:

144042

Intron Class:

major

Intron Phase:

Intron Coordinates:

4909040 - 4909225

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCTT

5'SS Class:

strong_major

3'SS Sequence:

TTAATCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.8

39.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.9

0.74

0.9

77.3

36.5

Minor 5ss

-1.6

3.6

55.8

48.4

Minor BPS

75.6

0.78

1.3

83.1

29.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027647

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040220

4908896 - 4917046

8151

ENSAPLT00000039846

4908896 - 4909778

883