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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49136595_49137274_R

Intron Information:

Intron Rank:
149087
Intron Class:
major
Intron Phase:
Intron Coordinates:
49136595 - 49137274
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
GCATGTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
TGGAGTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
65
0.37
1
73
31.6
Major PPT
72
0.5
1
61.7
44.3
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
43.8
-0.4
2.3
56.17
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027704
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040526
49127204 - 49138107
10904