Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49144909_49146614_R

Intron Information:

Intron Rank:

149088

Intron Class:

major

Intron Phase:

Intron Coordinates:

49144909 - 49146614

Intron Length:

1706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TATCTCTGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATAGTTTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.15

0.6

96.2

11.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.2

0.63

0.9

73.3

36.8

Minor 5ss

39.3

-1.2

2.8

50.9

45.5

Minor BPS

57.1

0.08

1.4

57.48

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041109

49144539 - 49147177

2639