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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49193281_49196633_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49193281 - 49196633
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTTCTCTATTT
Flanking Amino Acid:
SMMDRMFALERLARTGIIVT
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
87
0.83
0.7
85.2
27.8
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
54.3
0.21
1.9
75.99
41.5

Associated Gene:

Gene:
ISOC1
Ensembl Gene ID:
ENSAPLG00000030121
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025661
49191768 - 49210153
18386