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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4927294_4929019_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4927294 - 4929019
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTCTTGCTG
Flanking Amino Acid:
ELSDLLDFSAMFSPPVSSGK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
46.3
-0.4
3.5
69.4
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017851
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047119
4925212 - 4929100
3889