Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49298771_49299145_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49298771 - 49299145

Intron Length:

375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTAT

5'SS Class:

strong_major

3'SS Sequence:

ATATTTTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTTATTTTAAAA

Flanking Amino Acid:

YFTDRVGDTFRWKGENVATV

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

77.4

33.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.8

0.56

70.7

39.1

Minor 5ss

44.5

-0.6

3.2

63.6

48.1

Minor BPS

61.2

0.35

1.4

68.54

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005348

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037724

49293468 - 49313546

20079

ENSAPLT00000005525

49293468 - 49313001

19534