Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49299345_49300782_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49299345 - 49300782

Intron Length:

1438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TCATGGTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TTTTCTGTCACC

Flanking Amino Acid:

KHGRCKKAQIGEPGLLVTQV

Intron Amino Acid Position:

441

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.7

37.2

Major BPS

87.6

0.93

0.9

89.3

Major PPT

72.6

0.51

65.5

40.8

Minor 5ss

31.6

-2.1

3.1

45.7

Minor BPS

55.3

0.15

2.4

77.59

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005348

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037724

49293468 - 49313546

20079

ENSAPLT00000005525

49293468 - 49313001

19534