Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49320384_49325805_F

Intron Information:

Intron Rank:

131875

Intron Class:

major

Intron Phase:

Intron Coordinates:

49320384 - 49325805

Intron Length:

5422

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCCAT

U12 Branch Point Sequence:

TTTTTTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

81.8

38.5

Major BPS

62.2

0.3

1.4

72.5

43.5

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

-0.8

2.9

56.9

47.4

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020784

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020216

49317199 - 49328501

11303