About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49411745_49415694_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49411745 - 49415694
Intron Length:
3950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTCTTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAT
Flanking Amino Acid:
TLPGGNQCIVPICRNSCGDG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
72.3
37.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
0.8
76.7
32
Minor 5ss
38.8
-1.3
3.3
53.2
38.5
Minor BPS
66.1
0.58
1.3
79.19
36.4

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856