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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49507419_49508238_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49507419 - 49508238
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCAACTGAGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCTTACAT
Flanking Amino Acid:
PCHPCPAKNSAEFHGLCSSG
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.1
0.21
1
55.4
39.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
65
0.55
1.7
82.08
39

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029199
49410756 - 49554699
143944
ENSAPLT00000005892
49410756 - 49597611
186856