Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49546688_49546827_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49546688 - 49546827

Intron Length:

140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTTTTT

5'SS Class:

major

3'SS Sequence:

GCTTTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TCTGCTTTTATT

Flanking Amino Acid:

ALMPDVRTCADIDECENNPD

Intron Amino Acid Position:

1271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

80.7

34.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

0.76

0.8

81.4

34.9

Minor 5ss

44.8

-0.6

3.2

66.9

44.3

Minor BPS

58.6

0.35

1.7

74.98

42.6

Associated Gene:

Gene:

FBN2

Ensembl Gene ID:

ENSAPLG00000005655

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029199

49410756 - 49554699

143944

ENSAPLT00000005892

49410756 - 49597611

186856