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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49557152_49560898_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49557152 - 49560898
Intron Length:
3747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTGCTTTATAT
Flanking Amino Acid:
QLNPTGVGCVDNRVGNCYLK
Intron Amino Acid Position:
1561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.8
0.49
0.9
66.8
38.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
54.4
0.22
1.8
73.69
43.2

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856