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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49561860_49562491_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49561860 - 49562491
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCTGGATT
Flanking Amino Acid:
RPNPITIILEDIDECQELPG
Intron Amino Acid Position:
1638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.8
80.7
31.3
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
58
0.33
1.5
71.61
39.8

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856