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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49569280_49570171_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49569280 - 49570171
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GGTTTCTTACTA
Flanking Amino Acid:
SYNDLLLVCEDIDECSNGDN
Intron Amino Acid Position:
1838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73
34.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.7
0.62
0.9
73.8
40.5
Minor 5ss
34.2
-1.8
2.8
41.4
44.9
Minor BPS
61
0.34
1.6
68.24
38.4

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856