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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49570298_49570757_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49570298 - 49570757
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATTT
Flanking Amino Acid:
FKLSPNGACVDRNECLEIPN
Intron Amino Acid Position:
1880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.8
0.72
0.9
77
36.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
49.9
0.07
1.8
72.8
38.7

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856