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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49572712_49574644_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49572712 - 49574644
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTATATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTATATA
Flanking Amino Acid:
FELTHNNDCMDIDECSSFFG
Intron Amino Acid Position:
1961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
39.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.7
0.78
0.8
81.4
29.6
Minor 5ss
32.5
-2
3.5
39.8
46.2
Minor BPS
56.4
0.2
2
74.21
37.7

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856