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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49579729_49580005_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49579729 - 49580005
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TCCTACCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATCTTCCTACCT
Flanking Amino Acid:
TIPGIDDTREDVNECLESPG
Intron Amino Acid Position:
2159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.7
44.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
76.3
0.59
0.8
73.6
31.1
Minor 5ss
37.5
-1.4
3.1
42.2
44.7
Minor BPS
52.5
0.16
2
74.35
42.6

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856