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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49580132_49580275_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49580132 - 49580275
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGCGTCAC
5'SS Class:
major
3'SS Sequence:
CATTTACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
NLDFTGVHCIDTDECSIGNP
Intron Amino Acid Position:
2201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
59.9
41
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
76
0.59
0.9
69.3
35.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856