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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49582317_49583632_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49582317 - 49583632
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGGTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
CTTCTTGTAACA
Flanking Amino Acid:
TRRPDGEGCTDENECRTKPG
Intron Amino Acid Position:
2326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
66
0.36
1.2
67.1
42.8
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
52
0.06
2
67.58
39.4

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856