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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49586628_49587889_F

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49586628 - 49587889
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
ATTTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
HGPGYTTDGRDIDECKVMPN
Intron Amino Acid Position:
2437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.4
0.77
0.7
77.9
30.3
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856