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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49588016_49588581_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49588016 - 49588581
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
AAATCTTTAACA
Flanking Amino Acid:
TTDISSISCVDLDECSQSPK
Intron Amino Acid Position:
2479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
76.7
0.83
1.1
76.14
34.3

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856