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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49588705_49588858_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49588705 - 49588858
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CATCTCTTACTT
Flanking Amino Acid:
ILQEDGKTCKDLDECQTKQH
Intron Amino Acid Position:
2520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.9
0.76
0.8
81.1
29.7
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
55.8
0.26
1.6
69.76
41.6

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856