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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49589771_49591307_F

Intron Information:

Intron Rank:
61
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49589771 - 49591307
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCAATGCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTGTTCTACTT
Flanking Amino Acid:
SLDSTGLNCEDVDECDGNHR
Intron Amino Acid Position:
2602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
51.5
0.03
1.1
51.1
35.9
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
44.9
-0.3
1.9
62.82
42.7

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856