Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49591428_49593698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49591428 - 49593698

Intron Length:

2271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTGCTTACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAA

U12 Branch Point Sequence:

GTTTGCTTACTA

Flanking Amino Acid:

IQHYQWNQCVDENECSNPNT

Intron Amino Acid Position:

2642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

76.6

33.6

Major BPS

64.8

0.37

1.2

67.9

36.3

Major PPT

70.3

0.46

63.4

42.9

Minor 5ss

31.7

-2.1

3.1

36.4

Minor BPS

56.9

0.21

71.68

Associated Gene:

Gene:

FBN2

Ensembl Gene ID:

ENSAPLG00000005655

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005892

49410756 - 49597611

186856