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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49593931_49594649_F

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49593931 - 49594649
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTCAACA
Flanking Amino Acid:
CPPGYYRVGQGHCVSGMGFN
Intron Amino Acid Position:
2719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.6
0.71
0.9
78
34.9
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
66.7
0.52
1.7
80.77
34.6

Associated Gene:

Gene:
FBN2
Ensembl Gene ID:
ENSAPLG00000005655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005892
49410756 - 49597611
186856