Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49619157_49619992_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49619157 - 49619992

Intron Length:

836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAC

U12 Branch Point Sequence:

ACAGGTTTAACT

Flanking Amino Acid:

EHSSTANIIVMSLPVARKGA

Intron Amino Acid Position:

974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

71.9

0.54

1.2

75.6

36.6

Major PPT

76.7

0.6

0.9

74.7

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

51.7

0.13

1.9

66.41

44.6

Associated Gene:

Gene:

SLC12A2

Ensembl Gene ID:

ENSAPLG00000006985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037806

49619021 - 49677404

58384

ENSAPLT00000007350

49619021 - 49721173

102153