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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49627154_49627833_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49627154 - 49627833
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
AAAAATCTTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATCTTTAAAA
Flanking Amino Acid:
SSERTPALRKEEEEDGKTST
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.5
0.21
1
48.4
44.6
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
71
0.65
1.3
74.57
36.3

Associated Gene:

Gene:
SLC12A2
Ensembl Gene ID:
ENSAPLG00000006985
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037806
49619021 - 49677404
58384
ENSAPLT00000007350
49619021 - 49721173
102153