Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49637691_49638930_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49637691 - 49638930

Intron Length:

1240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAAAC

5'SS Class:

major

3'SS Sequence:

ACATTTTGACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

TACATTTTGACT

Flanking Amino Acid:

VFHASLAKSPGWRPAFKYYN

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

68.6

36.4

Major BPS

61.4

0.28

1.1

36.5

Major PPT

61.1

0.25

55.6

43.8

Minor 5ss

32.1

-2

3.2

42.9

44.3

Minor BPS

60.8

0.42

1.3

71.76

39.5

Associated Gene:

Gene:

SLC12A2

Ensembl Gene ID:

ENSAPLG00000006985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037806

49619021 - 49677404

58384

ENSAPLT00000007350

49619021 - 49721173

102153