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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49640542_49641417_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49640542 - 49641417
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATTT
Flanking Amino Acid:
SLVSAPKIFQALCKDNIYPG
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.5
0.78
0.7
85
29.5
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
49.6
0.05
1.6
64.26
41

Associated Gene:

Gene:
SLC12A2
Ensembl Gene ID:
ENSAPLG00000006985
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007350
49619021 - 49721173
102153
ENSAPLT00000037806
49619021 - 49677404
58384