About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49661071_49677173_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49661071 - 49677173
Intron Length:
16103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
LILVPHIKFKEPFEDGYANG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81
0.7
0.9
87.2
23.8
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
SLC12A2
Ensembl Gene ID:
ENSAPLG00000006985
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037806
49619021 - 49677404
58384