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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49765273_49767121_R

Intron Information:

Intron Rank:
134774
Intron Class:
major
Intron Phase:
Intron Coordinates:
49765273 - 49767121
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
0.9
77.8
35.5
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019834
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020855
49759263 - 49767590
8328
ENSAPLT00000027509
49760490 - 49767590
7101