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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49825879_49826795_R

Intron Information:

Intron Rank:
143590
Intron Class:
major
Intron Phase:
Intron Coordinates:
49825879 - 49826795
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
67.1
40
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
35.5
-1.6
3
42
44.5
Minor BPS
60.6
0.41
1.9
81.12
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024585
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042822
49825323 - 49827049
1727