About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49892080_49895364_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49892080 - 49895364
Intron Length:
3285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAACATTACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTCAGTAATC
Flanking Amino Acid:
TPVPLQYVQQAKSLTPQDYN
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
58.2
0.19
1
50.6
41.7
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
49
-0
2.2
64.46
41.3

Associated Gene:

Gene:
PRRC1
Ensembl Gene ID:
ENSAPLG00000008003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032460
49890710 - 49920950
30241
ENSAPLT00000008316
49890710 - 49918924
28215
ENSAPLT00000032872
49890710 - 49920950
30241