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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49898113_49899441_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49898113 - 49899441
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CATTACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTACTT
Flanking Amino Acid:
QPVGYAAGLKGAQERIDSLR
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75
0.56
0.9
66.2
40.1
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
59.2
0.37
1.9
81.97
39.5

Associated Gene:

Gene:
PRRC1
Ensembl Gene ID:
ENSAPLG00000008003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032872
49890710 - 49920950
30241
ENSAPLT00000032460
49890710 - 49920950
30241
ENSAPLT00000008316
49890710 - 49918924
28215