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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49899606_49905009_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49899606 - 49905009
Intron Length:
5404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATGTATTTTACA
Flanking Amino Acid:
TLDPGMVPYIKTGGELDIVV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
79.6
0.67
0.9
72.9
41.4
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
53.4
0.1
1.8
66.31
40.4

Associated Gene:

Gene:
PRRC1
Ensembl Gene ID:
ENSAPLG00000008003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032872
49890710 - 49920950
30241
ENSAPLT00000032460
49890710 - 49920950
30241
ENSAPLT00000008316
49890710 - 49918924
28215