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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49908959_49910242_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49908959 - 49910242
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCCTTTTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
MPSFSAPPVTGVLADPITQQ
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
67.1
0.38
1.1
67.6
36.8
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
PRRC1
Ensembl Gene ID:
ENSAPLG00000008003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032872
49890710 - 49920950
30241
ENSAPLT00000032460
49890710 - 49920950
30241
ENSAPLT00000008316
49890710 - 49918924
28215