Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49910627_49914791_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49910627 - 49914791

Intron Length:

4165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACCAAAA

5'SS Class:

major

3'SS Sequence:

TTCTCTCTCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAA

U12 Branch Point Sequence:

TATTACTAAAAC

Flanking Amino Acid:

TAASATPVSLALSSPLATPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.2

38.9

Major BPS

77.5

0.68

0.8

76.2

24.6

Major PPT

79.6

0.67

0.7

73.3

31.7

Minor 5ss

37.3

-1.4

3.1

48.9

46.9

Minor BPS

55.2

0.14

70.22

40.4

Associated Gene:

Gene:

PRRC1

Ensembl Gene ID:

ENSAPLG00000008003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032872

49890710 - 49920950

30241

ENSAPLT00000032460

49890710 - 49920950

30241

ENSAPLT00000008316

49890710 - 49918924

28215