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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49914909_49918889_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
49914909 - 49918889
Intron Length:
3981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTGCTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.7
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.95
0.6
88.5
21.2
Minor 5ss
42.4
-0.8
2.8
54.3
38.2
Minor BPS
57.1
0.3
2
79.39
42

Associated Gene:

Gene:
PRRC1
Ensembl Gene ID:
ENSAPLG00000008003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008316
49890710 - 49918924
28215