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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49952806_49953784_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49952806 - 49953784
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTGCTGAACA
Flanking Amino Acid:
ASANKNVYEVEPTVSVVQGA
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
85.1
27.9
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
63
0.4
1.9
76.23
41

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245