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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49958016_49958178_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49958016 - 49958178
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTCTTTGAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTCTTTGAAAT
Flanking Amino Acid:
NNMDRLTLAKAKNNQLFVNL
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
68.5
0.42
1
66.3
38.7
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
60.2
0.4
1.5
79.37
36.1

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245