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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49959879_49960449_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49959879 - 49960449
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTATGTAATA
Flanking Amino Acid:
PGWKGARCDQAGVIIVGNLN
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
100
1.24
0.5
100
0
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
51.8
0.05
2.1
70.28
36.3

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245