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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49987170_49993130_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49987170 - 49993130
Intron Length:
5961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAGCTCTGAATT
Flanking Amino Acid:
KCPCHLPNTWSCHPMSGECS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.6
0.42
0.9
64.3
31
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
59
0.36
1.4
71.29
39.6

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245