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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_49993344_49996682_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49993344 - 49996682
Intron Length:
3339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTTTCTCACAG
Flanking Amino Acid:
CHCSPGYTGERCQDECPVGT
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
85.3
0.79
0.8
80.1
32
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
49.9
-0.1
2
64.47
43.3

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245