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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50014434_50022350_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50014434 - 50022350
Intron Length:
7917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
CCTTCTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
GFYESREMCVPHCADKCVHG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
69.3
43.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
0.9
71.8
32.8
Minor 5ss
39.7
-1.2
3
54.8
42.5
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
MEGF10
Ensembl Gene ID:
ENSAPLG00000002754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002816
49952645 - 50023889
71245