Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50041528_50053223_R

Intron Information:

Intron Rank:

149069

Intron Class:

major

Intron Phase:

Intron Coordinates:

50041528 - 50053223

Intron Length:

11696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCACG

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TCTCTTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

62.3

43.9

Major BPS

84.7

0.86

74.3

40.7

Major PPT

91.5

0.93

0.6

Minor 5ss

32.9

-2

3.1

39.9

45.9

Minor BPS

72.5

0.7

1.2

75.92

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027692

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032801

50032998 - 50053667

20670