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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50064360_50066163_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
50064360 - 50066163
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCGCAGGGT
5'SS Class:
weak_major
3'SS Sequence:
CGGCTTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAA
U12 Branch Point Sequence:
AGGCCATGAAGG
Flanking Amino Acid:
AESKPECPLCKSGMELAPPQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.2
56.6
37.7
Major BPS
50.5
0.01
1.1
43.3
37.8
Major PPT
64.8
0.33
1.1
57.5
43.2
Minor 5ss
15.2
-4
4.1
27.7
42
Minor BPS
41.7
-0.7
1.9
42.59
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024573
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026059
50064217 - 50066203
1987